Repositioning genes awakens fetal hemoglobin to treat disease. CRISPR editing may change future gene therapy.
Researchers have
discovered a promising new approach to gene therapy by reactivating genes that
are normally inactive. They achieved this by moving the genes closer to
regulatory elements on the DNA known as enhancers. To do
so, they used CRISPR-Cas9 technology to cut out the piece of DNA separating the
gene from its enhancer. This method could open up new ways to treat genetic
diseases. The team demonstrated its potential in treating sickle cell disease
and beta-thalassemia, two inherited blood disorders.
In these cases, a malfunctioning gene might be bypassed by reactivating an alternative gene that is usually turned off. This technique, called “delete-to-recruit,” works by altering the distance between genetic elements without introducing new genes or foreign material. The study was conducted by researchers from the Hubrecht Institute (De Laat group), Erasmus MC, and Sanquin, and published in the journal Blood.
Genes in our DNA contain the instructions for making
proteins, which carry out many essential functions in cells. However, not all
genes are active at all times. Some are only switched on when certain nutrients
need to be processed, while others are active only during early development and
later shut down. Proper cell function depends on tightly controlled gene
activity. One important regulatory mechanism involves enhancers, which are
segments of DNA that act like switches to turn genes on.
Bringing it closer
Enhancers can be located right next to the genes they
regulate or positioned much farther away along the DNA.
“In this study, we discovered that it’s possible to activate a gene by bringing it closer to an enhancer,” said Anna-Karina Felder, one of the study’s first authors. Felder and her colleagues Sjoerd Tjalsma, Han Verhagen, and Rezin Majied accomplished this using CRISPR-Cas9, a gene-editing tool that works like precise molecular scissors.
Schematic representation of
delete-to-recruit technology in sickle cell disease and beta-thalassemia. The
black lines represent the DNA. In the starting situation (above), the adult
globin genes (purple) are broken and fetal globin genes (pink and green) are
inactive. The enhancer (blue) lies at some distance from the fetal genes.
Application of delete-to-recruit technology (below) brings the enhancer closer
to the fetal genes, activating them. To achieve this, the intermediate piece of
DNA was cut out with CRISPR-Cas9 (scissors). Credit: Anna-Karina Felder/
Hubrecht Institute
“We directed the scissors to cut out a piece of DNA between an enhancer and its gene, bringing them closer together,” Felder explained. “In adult cells, this successfully reactivated genes that are normally only active during embryonic development.” The researchers call this new method of gene activation “delete-to-recruit.”
Faulty hemoglobin
The new strategy offers hope for people with sickle
cell disease and beta-thalassemia. In these inherited blood disorders, the
adult globin gene does not function correctly. As a result, the body cannot
produce normal hemoglobin, the protein that carries oxygen in red blood cells.
Without properly formed hemoglobin, red blood cells break down too quickly,
leading to serious and lifelong symptoms such as anemia, fatigue, and
eventually organ damage. Many patients rely on regular blood transfusions to
manage these conditions.
Restarting the backup engine
Delete-to-recruit technology could be used to treat
these patients by harnessing the fetal globin gene. This gene is naturally
active before birth, and part of the hemoglobin produced within the fetus. Once
the child is born, it is switched off. “In people with sickle cell disease or
beta-thalassemia, it’s the adult globin gene—the main engine that powers red
blood cells—that is broken. But fetal globin is like a backup engine. By
switching it back on, we can repower the red blood cells and possibly cure these
patients,” Felder says.
The team
collaborated with researchers at Erasmus MC (Philipsen) and Sanquin (Van den
Akker) to show that this strategy works in cells from human healthy donors and
patients with sickle cell disease. Particularly important is that the team
confirmed its efficacy in blood stem cells. These cells are responsible for
producing the variety of blood cells in our body, including red blood cells. By
reactivating fetal globin in blood stem cells, these cells can give rise to
healthy red blood cells instead of broken ones.
New
possibilities
“While we’re still in the early stages, this research
lays important groundwork for the development of new gene therapies,” Felder
says.
This goes beyond the scope of genetic blood diseases,
as the new method could also be applied to other diseases where insufficient
amounts of healthy proteins can be compensated by restarting a ‘backup engine
gene’. The broader field of gene therapy could thus benefit from
delete-to-recruit technology, because it uses a different approach than
currently available therapies.
“Editing the distance to an enhancer, instead of the
genes themselves, could offer a versatile therapeutic approach,” Felder
concludes.
For patients with sickle cell disease and thalassemia,
the new approach could—in the future—provide an alternative to the currently
available gene therapy. While the existing gene therapy was approved for use in
Europe in 2024, it is very expensive, which limits its accessibility. Moreover,
this treatment modifies a globin repressor gene, which indeed causes
reactivation of fetal globin, but may well have effects on other genes as well,
with unknown consequences for the patient. Delete-to-recruit may circumvent
both problems.
Funding: USEQ is subsidized by the University Medical Center Utrecht, USEQ is subsidized by The Netherlands X-omics Initiative, Research in the laboratory of WdL was financially supported by the EU Horizon 2020-funded Innovative Training Network ‘Molecular Basis of Human Enhanceropathies’ (Enhpathy,www.enhpathy.eu), under Marie Sklodowska-Curie grant, Research in the laboratory of WdL was financially supported by an NWO Groot grant from the Netherlands Organisation for Scientific Research (NWO), Research in the laboratory of WdL was financially supported by Oncode Institute Base Funding, Work in the laboratory of SP was supported by TKI Health Holland, Work in the laboratory of SP was supported by ZonMw PSIDER consortium TRACER, Work in the laboratory of SP was supported by EU Horizon Europe Pathfinder EdiGenT, Work in the laboratory of SP was supported by NWO Applied and Engineering Sciences Open Technology Programme, Work by the laboratory of EvdA was supported by Sanquin Blood Supply grant, Work by the laboratory of EvdA was supported by Sanquin research fund.